Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs829577 chr2:30680450 C/G cg12454169 chr2:30669597 LCLAT1 1.24 30.78 0.84 3.0E-105 Box Plot
BLCA rs829579 chr2:30678838 G/C cg12454169 chr2:30669597 LCLAT1 1.24 30.86 0.85 1.42E-105 Box Plot
BLCA rs829584 chr2:30677275 C/T cg12454169 chr2:30669597 LCLAT1 -1.22 -30.74 -0.84 4.12E-105 Box Plot
BLCA rs829623 chr2:30755612 G/C cg12454169 chr2:30669597 LCLAT1 1.26 31.32 0.85 2.55E-107 Box Plot
BLCA rs829636 chr2:30737801 T/G cg12454169 chr2:30669597 LCLAT1 1.26 30.97 0.85 5.68E-106 Box Plot
BLCA rs829638 chr2:30738382 G/A cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs829645 chr2:30696720 A/G cg12454169 chr2:30669597 LCLAT1 1.26 31.24 0.85 5.27E-107 Box Plot
BLCA rs829647 chr2:30718993 T/C cg12454169 chr2:30669597 LCLAT1 1.26 30.52 0.84 2.92E-104 Box Plot
BLCA rs829648 chr2:30718809 A/G cg12454169 chr2:30669597 LCLAT1 1.26 30.52 0.84 2.92E-104 Box Plot
BLCA rs829649 chr2:30718260 C/T cg12454169 chr2:30669597 LCLAT1 1.26 31.67 0.85 1.24E-108 Box Plot
BLCA rs829650 chr2:30718241 A/G cg12454169 chr2:30669597 LCLAT1 1.26 31.67 0.85 1.24E-108 Box Plot
BLCA rs829651 chr2:30717010 C/G cg12454169 chr2:30669597 LCLAT1 1.26 31.67 0.85 1.24E-108 Box Plot
BLCA rs829658 chr2:30728359 T/G cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs829686 chr2:30705820 T/C cg12454169 chr2:30669597 LCLAT1 1.26 31.94 0.85 1.18E-109 Box Plot
BLCA rs829687 chr2:30705706 G/A cg12454169 chr2:30669597 LCLAT1 1.26 31.94 0.85 1.18E-109 Box Plot